Commits · master · Till Wesselmann / halfpipe · GitLab

Apr 02, 2021
- Add LICENSE · e9cad006
  Till Wesselmann authored Apr 02, 2021
  
  e9cad006
- Add link to gitlab repository · 12c8e9dc
  Till Wesselmann authored Apr 02, 2021
  
  12c8e9dc
- Fix auth validator · 83e1d7c0
  Till Wesselmann authored Apr 02, 2021
  
  83e1d7c0
- Add urls to jaspar and uniprot to motifs · 0f59c56f
  Till Wesselmann authored Apr 02, 2021
  
  0f59c56f
- Fix undefined filename · c42a1ec4
  Till Wesselmann authored Apr 02, 2021
  
  c42a1ec4
Apr 01, 2021
- Convert clustersize to int · c17e4f68
  Till Wesselmann authored Apr 01, 2021
  
  c17e4f68
- Use linechart for displaying mean gc in contrast to duplicated reads · 5351eae0
  Till Wesselmann authored Apr 01, 2021
  
  5351eae0
- Set differential dotplot to default · 3bc43f73
  Till Wesselmann authored Apr 01, 2021
  
  3bc43f73
- Fix python formatting · 0f351a6a
  Till Wesselmann authored Apr 01, 2021
  
  0f351a6a
- Switch filetable to accordeon · 3a0b7eb2
  Till Wesselmann authored Apr 01, 2021
  
  3a0b7eb2
- Add note field for process identification · fa1f5bb7
  Till Wesselmann authored Apr 01, 2021
  
  fa1f5bb7
- Honor accept on file inputs · 96c58d70
  Till Wesselmann authored Apr 01, 2021
  
  96c58d70
- Move explanations to accordions · 03031cfe
  Till Wesselmann authored Apr 01, 2021
  
  03031cfe
- Add url to mails and show pk of pipeline in the detail page · 042e17e5
  Till Wesselmann authored Apr 01, 2021
  
  042e17e5
- Use coverage for assessing data quality · d83935ad
  Till Wesselmann authored Apr 01, 2021
  
  d83935ad
- Change plot sizes on peak annotation · 055157fc
  Till Wesselmann authored Apr 01, 2021
  
  055157fc
- Use separate threading option for R scripts · 20044047
  Till Wesselmann authored Apr 01, 2021
  
  20044047
- Added total number of reads to Post-ALQC plot, change phrasing in Aligment plot · e8e8ac6e
  Isabell Orlishausen authored Apr 01, 2021 and Till Wesselmann committed Apr 01, 2021
  
  e8e8ac6e
- Copy rgt data to correct user home · aba7d1a3
  Till Wesselmann authored Apr 01, 2021
  
  aba7d1a3
Mar 31, 2021
- Allow deletion of differential analysis · f374fb2c
  Till Wesselmann authored Mar 31, 2021
  
  f374fb2c
- Retain results for 24h · d5b6fd30
  Till Wesselmann authored Mar 31, 2021
  
  d5b6fd30
- Reduce R threads to half of BIO_THREADS · f11f28a3
  Till Wesselmann authored Mar 31, 2021
  
  f11f28a3
- Use module call to pytest · 3a5087e2
  Till Wesselmann authored Mar 31, 2021
  
  3a5087e2
- user install pip · b71799fe
  Till Wesselmann authored Mar 31, 2021
  
  b71799fe
- Use non root user for worker · 38aa8dad
  Till Wesselmann authored Mar 31, 2021
  
  38aa8dad
- Don't acknowledge tasks late · 641e4a3f
  Till Wesselmann authored Mar 31, 2021
  
  641e4a3f
Mar 30, 2021
- Build bowtie with pthreads and no spinlocks · 21d29956
  Till Wesselmann authored Mar 30, 2021
  
  21d29956
- Pass core count to r scripts · 525d302a
  Till Wesselmann authored Mar 30, 2021
  
  525d302a
- Build worker with patched chipseeker that honours cpu count · 01e546cd
  Till Wesselmann authored Mar 30, 2021
  
  01e546cd
- Make concurrency configurable on celery · 449efcd6
  Till Wesselmann authored Mar 30, 2021
  
  449efcd6
Mar 29, 2021
- Store output of samtools on alignment · 4f95ae0d
  Till Wesselmann authored Mar 29, 2021
  
  4f95ae0d
- Factor in genome size for quality estimation · 237e815a
  Till Wesselmann authored Mar 29, 2021
  
  237e815a
- Merge branch 'feature/plots' into 'master' · b9ea8edf
  Isabell Orlishausen authored Mar 29, 2021
```
Feature/plots

See merge request !15
```
  b9ea8edf
- Fix alignment count and tests for plots · ed624a70
  Till Wesselmann authored Mar 29, 2021
  
  ed624a70
- Fix formatting and merge migrations · 12adfb44
  Till Wesselmann authored Mar 29, 2021
  
  12adfb44
- Multiple metrics plotting for Post-ALQC, fixed html code in detail.html · acbe8e6b
  Isabell Orlishausen authored Mar 29, 2021 and Till Wesselmann committed Mar 29, 2021
  
  acbe8e6b
- JS Alignment plot with migration, snippet for Post-ALQC multiple metrics plots · 74a2c3c9
  Isabell Orlishausen authored Mar 29, 2021 and Till Wesselmann committed Mar 29, 2021
  
  74a2c3c9
Mar 28, 2021
- Merge branch 'feature/email' · 6a776a66
  Till Wesselmann authored Mar 28, 2021
  
  6a776a66
- Merge branch 'feature/unified-footprinting' into 'master' · 81fad8a1
  Till Wesselmann authored Mar 28, 2021
```
Feature/unified footprinting

See merge request !13
```
  81fad8a1
- Enable email notifications for pipelines and differential analysis · 2e258a80
  Till Wesselmann authored Mar 28, 2021
  
  2e258a80